Coding for COVID-19 Testing

Updated October 19, 2020

Download PDF

The Centers for Disease Control & Prevention (CDC), the Centers for Medicare & Medicaid Services (CMS), and the American Medical Association (AMA) Current Procedural Terminology (CPT) Editorial Panel worked quickly to create diagnosis and billing codes for the COVID-19 pandemic, with specific instructions for maternity care.


Insurance coverage

CMS requires group and individual health plans to cover visits that result in the administration of COVID-19 testing provided on or after March 18, 2020 without prior authorization or cost-sharing, including telehealth and non-traditional care settings, such as drive-through COVID-19 screening sites.

Diagnosis Coding

Effective April 1, 2020, a new ICD-10-CM diagnosis code chapter, Chapter 22 Codes for Special Purposes (U00-U85) and new code U07.1 COVID-19 was made available for reporting the coronavirus diagnosis.

Coding Rules for U07.1:

  • U07.1 should only be used for confirmed cases of COVID-19 with positive or presumptive-positive test results.
  • U07.1 should be sequenced first, followed by the appropriate codes for associated manifestations, except in the case of obstetrics patients
  • Obstetric patients with confirmed COVID-19 during pregnancy, childbirth or the puerperium should have O98.5-, Other viral diseases, as the primary diagnosis, followed by code U07.1 and any codes for associated manifestation(s).
  • If COVID-19 is not confirmed or if testing is negative, the following Encounter Codes should be used:

Z11.59: Encounter for screening for other viral diseases

Asymptomatic, no known exposure, results unknown or negative

Z03.818: Encounter for observation for suspected exposure to other biological agents ruled out

Possible exposure to COVID-19, infection ruled out

Z20.828: Contact with and (suspected) exposure to other viral communicable diseases

Contact with COVID-19, Suspected exposure

The following diagnosis codes may be appropriate as associated manifestations, regardless of confirmed COVID-19:

  • R05: Cough
  • R06.02: Shortness of breath
  • R50.9: Fever, unspecified
  • J12.89: Other viral pneumonia
  • J20.8: Acute bronchitis due to other specified organisms
  • J22: Unspecified acute lower respiratory infection
  • J40: Bronchitis, nor specified as acute or chronic
  • J80: Acute respiratory distress syndrome
  • J96.01: Acute respiratory failure with hypoxia
  • J98.8: Other specified respiratory disorders

Swab Collection

There is no specific code for swabbing the enduring for COVID-19. Swab collection is included in E/M service. However, if collected in the office and transported to the laboratory, CPT code 99000 can be billed:

  • 99000: Handling and/or conveyance of specimen for transfer from office to a laboratory


There are three codes for COVID-19 testing: 87635 is designed to detect the COVID-19 virus and effective March 13, 2020, and 86328 and 86769 will be used to identify the presence of antibodies to the COVID-19 virus and are effective April 10, 2020.

Please note that all aforementioned changes are not included in CPT 2020 code set. They will be included in CPT 2021 in the Pathology and Laboratory section, The Immunology subsection.

  • 86328: Immunoassay for infectious agent antibody(ies), qualitative or semiquantitative, single step method (eg, reagent strip); severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Coronavirus disease [COVID-19])
  • 86769: Antibody; severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (Coronavirus disease [COVID-19])
  • 87635: Infectious agent detection by nucleic acid (DNA or RNA); severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (Coronavirus disease [COVID-19]), amplified probe technique

In-Person Office Visits

The American Medical Association has created a billing code to reimburse for the additional supplies and clinical staff time required to mitigate transmission of respiratory infectious disease while providing evaluation, treatment, or procedural services during a public health emergency in the outpatient office setting. CPT® code 99072 can be utilized by all payers, although there has not been widespread acceptance. Obstetrician-gynecologists should inquire with the payers they contract with to see if they can bill 99072 for each patient seen in the office. The code is intended to be billed once per patient on the date of service, regardless how many services or physicians and health care professionals the patient encountered at that practice. For more information or to answer questions, submit a ticket.

Additional Resources

Payer Resources

Private payers continue to update their policies as the COVID-19 public health crisis. To check each payer’s most updated policy changes in relation to the billing and coding for telehealth and COVID-19, please visit the payer’s website.